Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs4723203 chr7:32815508 G/T 9.02E-5 503 32.1 31.47 31.47 KM Plot
THCA rs4724248 chr7:43886991 T/A 3.84E-5 495 31.47 32.15 38.73 KM Plot
THCA rs4724249 chr7:43887159 G/A 5.21E-6 491 31.47 32.03 44.2 KM Plot
THCA rs4724254 chr7:43930775 T/C 1.57E-9 498 31.03 34.62 31.03 KM Plot
THCA rs4724256 chr7:43947062 C/A 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs4724257 chr7:43967230 A/G 3.1E-8 503 31.03 33.5 31.27 KM Plot
THCA rs4724258 chr7:43970294 C/A 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs4724259 chr7:43972564 G/A 2.62E-8 499 31.27 33.38 32.37 KM Plot
THCA rs4724260 chr7:43972628 T/C 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs4724261 chr7:43996425 C/A 2.23E-8 503 31.15 33.5 32.37 KM Plot
THCA rs4724262 chr7:43996661 T/A 1.54E-9 503 31.15 33.52 31.03 KM Plot
THCA rs4747637 chr10:29325616 A/G 2.88E-9 499 31.77 30.38 29.28 KM Plot
THCA rs4747638 chr10:29325656 T/C 2.88E-9 499 31.77 30.38 29.28 KM Plot
THCA rs4749377 chr10:29325758 C/T 2.75E-9 500 31.8 30.38 29.28 KM Plot
THCA rs4749380 chr10:29337226 C/T 5.44E-7 503 31.8 30.38 27.1 KM Plot